MmuEX0034338 @ mm10
Exon Skipping
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22895522-22901873:+
Coord C1 exon
chr2:22895522-22895762
Coord A exon
chr2:22901281-22901345
Coord C2 exon
chr2:22901753-22901873
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTCATACTTTTGTTTTACAGATA
3' ss Score
10.58
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGGGAACAGGGTGCGGCTTCGCGCTTCCGGTGCCCAGCTTCCGGCTCCGGGTTTGGGCTTGGGGCAGAGGCGGAGCTACGGCCCGCCGCGACTTTCAGACTTGAACCATGGCTATGCGCTGGTCGTGCTGGCGGCGTGGCTGCTCCTGGAGGCCGACCGCGGTCGGGAGCCCGCGGCGGGAACGACCTGGCTGTGTGGAGCCTCTCGGAACACGTGCCGCCTCGGACACCCGCGCGCAG
Seq A exon
ATACCCTATTTTAGTCTTATGAAGATTTTAATGTCTGCCTCCCCAACTATGCATAGTATATCACA
Seq C2 exon
GTTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTGTATGAAGACATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=0.000 C2=0.073
Domain overlap (PFAM):
C1:
PF073657=Toxin_8=PU(35.3=27.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000053729fB14409
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAACCATGGCTATGCGCT
R:
TGCACATTGCTGGTGTCCTTT
Band lengths:
169-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types