DreEX0054527 @ danRer10
Exon Skipping
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5992507-5995137:-
Coord C1 exon
chr24:5994953-5995137
Coord A exon
chr24:5994169-5994224
Coord C2 exon
chr24:5992507-5992633
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTGTGTTTCAGGTT
3' ss Score
12.83
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTGACGTCACTGGGCATGTGCGGCTCTCGGTTGTGTGTGCGAGCATGGCGGTGCCGTGGAGCCGATGCTGGAGGAGCAGCACAGGAGCTGCTGTATTACTACAATATTGTTGTATTTCCAGCAGAAGAGCTTTCACTCCAGCGGCTTCAGCAGGAAGAAAAGCTGCTACTTCCGCCGCCACACAG
Seq A exon
GTTTTATTTCAGCAGGGTCATGTACATAGTTTTAACAAACCAGTGACTCTTTCAAG
Seq C2 exon
GCACAGGTGTAAATATCTGTACTCAACGCCCCGAGTCAGCTGCAGTTTACACAGTGATGCAAAGTTAAAAGATCCTTTCTCACTCGTACAAAAGGACTTGCAAAATATATATGATGACATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGAGCTGCTGTATTACT
R:
TCGGGGCGTTGAGTACAGATA
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]