HsaEX0046472 @ hg19
Exon Skipping
Gene
ENSG00000148459 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759]
Coordinates
chr10:26991091-26994323:+
Coord C1 exon
chr10:26991091-26991123
Coord A exon
chr10:26993606-26993670
Coord C2 exon
chr10:26994215-26994323
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGACATTTTTATTTTATAGATA
3' ss Score
9.31
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GTTCATAGGCGGAAGGGACTTGACTTGTCTCAG
Seq A exon
ATACCCTATATTAATCTTGTGAAGCATTTAACATCTGCCTGTCCAAATGTATGTCGTATATCACG
Seq C2 exon
GTTTCATCACACAACCCCAGACAGTAAAACACACAGTGGTGAAAAATACACCGATCCTTTCAAACTCGGTTGGAGAGACTTGAAAGGTCTGTATGAGGACATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.270
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATAGGCGGAAGGGAC
R:
ATGTCCTCATACAGACCTTTCAAGT
Band lengths:
135-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)