GgaEX1042931 @ galGal4
Exon Skipping
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15997839-15999697:-
Coord C1 exon
chr2:15999572-15999697
Coord A exon
chr2:15998848-15998912
Coord C2 exon
chr2:15997839-15997962
Length
65 bp
Sequences
Splice sites
3' ss Seq
CCTGCTTTTTCTTCGTGCAGATG
3' ss Score
10.56
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
ATGGCCTTGCGCTGGTGGCGGCGGTGCGGCTCTTTCTGCCGCCGGGCACCGCCGCTCGGTCCCGCGCCGCCCCTCCGCCCGCCGGCGCACGGCCTACGCGGACCGCCGCCCGCCCTGCGCGCCGCG
Seq A exon
ATGTGTCACTTTCCCCAAAGAAGCTCAGTATGGCCATTTCCAAAACTGTGTAGTATACCTTGGCG
Seq C2 exon
GTTCCATCATACAAGTACAGCCCTCATGTGCAGCTGCAGTAAGACAGTTAGTGATGAAAAATACCAAGACCCTTTTCAACTTGGCAGAAAAGACTTGAAGAATCTCTATGAGGATATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559-'4-2,'4-1,6-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGGCTCTTTCTGCC
R:
AGGGTCTTGGTATTTTTCATCACT
Band lengths:
177-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]