GgaEX1051162 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21329182-21335079:-
Coord C1 exon
chr7:21334792-21335079
Coord A exon
chr7:21330243-21330590
Coord C2 exon
chr7:21329182-21329314
Length
348 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTATTTGCCTACAGTCT
3' ss Score
8.57
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GCAGCAGCAGCAGCTGCAGCAGCTGACTCAAGAGATTATAGCGGAGTAGGTGGAATAGGTGGATTCTCTGAGAGTTCTTCTGAGGCATCCAAACTGAGTTCAAAGAGTGCTAAAGAGAGGAGGAATAGAAGAAAGAAAAAAAAGCAAAAAGAACAAGCTGAAGGTGAGAAGGATGAGGAAGAATTTCGCAAATCCGAATCAGAGGACAGCATCAAAAGAAAAGGCTTCCGATTTTCCATTGAGGGGAATAGACTGACATATGAAAAGAGATTCTCTTCCCCACACCAG
Seq A exon
TCTTTGCTGAGTATTCGTGGCTCCCTATTTTCCCCAAGGCGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGTCGTGCAAAGGATGTAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGAGAGCAGAAGAGATTCTCTCTTTGTTCCTCATAGACATGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGACAGTACCTCCACTTCCAGTGAACGGGAAGATGCACAGCACTGTGGATTGTAATGGAGTAGTTTCTTTAGTCGGTGGGCCTCCAGCTCTGACGTCGCCTACTGGACAGCTTCTGCCAGAG
Seq C2 exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=0.750 C2=0.311
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(30.8=71.9)
A:
PF119333=DUF3451=FE(51.3=100)
C2:
PF119333=DUF3451=PD(16.5=82.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGTAGGTGGAATAGGT
R:
TACTCATTGCTCGCTGCCTTG
Band lengths:
352-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]