GgaEX1051162 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19351077-19355826:-
Coord C1 exon
chr7:19355539-19355826
Coord A exon
chr7:19352138-19352485
Coord C2 exon
chr7:19351077-19351209
Length
348 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTATTTGCCTACAGTCT
3' ss Score
8.57
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GCAGCAGCAGCAGCTGCAGCAGCTGACTCAAGAGATTATAGCGGAGTAGGTGGAATAGGTGGATTCTCTGAGAGTTCTTCTGAGGCATCCAAACTGAGTTCAAAGAGTGCTAAAGAGAGGAGGAATAGAAGAAAGAAAAAAAAGCAAAAAGAACAAGCTGAAGGTGAGAAGGATGAGGAAGAATTTCGCAAATCCGAATCAGAGGACAGCATCAAAAGAAAAGGCTTCCGATTTTCCATTGAGGGGAATAGACTGACATATGAAAAGAGATTCTCTTCCCCACACCAG
Seq A exon
TCTTTGCTGAGTATTCGTGGCTCCCTATTTTCCCCAAGGCGCAATAGCAGAACAAGTCTTTTCAGCTTCAGAGGTCGTGCAAAGGATGTAGGATCTGAAAATGACTTTGCTGATGATGAGCACAGCACTTTTGAAGACAATGAGAGCAGAAGAGATTCTCTCTTTGTTCCTCATAGACATGGTGAACGGCGCAACAGTAACATTAGTCAGGCCAGTAGGTCATCCAGGACAGTACCTCCACTTCCAGTGAACGGGAAGATGCACAGCACTGTGGATTGTAATGGAGTAGTTTCTTTAGTCGGTGGGCCTCCAGCTCTGACGTCGCCTACTGGACAGCTTCTGCCAGAG
Seq C2 exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'9-12,'9-10,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.750 C2=0.311
Domain overlap (PFAM):
C1:
PF143621=DUF4407=PD(58.6=85.4),PF119333=DUF3451=PU(30.8=71.9)
A:
PF119333=DUF3451=FE(51.3=100)
C2:
PF119333=DUF3451=PD(16.5=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGGAGTAGGTGGAATAGGT
R:
TACTCATTGCTCGCTGCCTTG
Band lengths:
352-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]