RnoEX6017134 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51757905-51776337:+
Coord C1 exon
chr3:51757905-51758192
Coord A exon
chr3:51771126-51771473
Coord C2 exon
chr3:51776208-51776337
Length
348 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTTGGTCTAGTCT
3' ss Score
7.48
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GCAGCAGCTGCAGCAGCGTCCGCAGAATCCAGAGACTTCAGCGGGGCAGGCGGGATAGGTGTTTTCTCGGAGAGTTCGTCAGTAGCCTCAAAGTTAAGTTCCAAAAGTGAAAAGGAGTTGAAAAACAGAAGAAAGAAAAAGAAACAGAAAGAACAGGCTGGGGAGGAAGAGAAGGAAGACGCGGTGCGGAAATCTGCCTCTGAGGACAGCATACGAAAGAAAGGCTTCCGGTTTTCCCTGGAAGGAAGTAGATTGACCTACGAGAAGAGATTTTCCTCTCCGCACCAG
Seq A exon
TCTCTCTTGAGCATCCGAGGCTCCCTATTTTCTCCAAGACGCAACAGTAGAGCAAGCCTTTTCAGCTTCAAAGGTCGAGTGAAGGATATTGGTTCCGAAAATGACTTTGCAGACGATGAACACAGCACATTTGAGGACAACGACAGCAGAAGAGACTCTCTATTTGTACCACACAGACATGGAGAAAGGCGTCCTAGCAATGTCAGCCAGGCCAGCCGTGCCTCCCGGGGGATACCCACTCTACCCATGAATGGGAAGATGCACAGTGCAGTGGACTGCAACGGTGTGGTGTCCCTGGTTGGAGGCCCCTCTGCGCTCACATCGCCTGTGGGGCAGCTGCTGCCGGAG
Seq C2 exon
GGCACAACTACTGAGACAGAAATAAGGAAGAGGAGATCCAGTTCTTACCACGTCTCTATGGACTTGTTGGAAGACCCTTCAAGGCAAAGGGCAATGAGTATGGCCAGTATTTTGACGAACACTATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'15-21,'15-20,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.578 C2=0.449
Domain overlap (PFAM):
C1:
PF0253517=Zip=PD(44.9=78.1),PF119333=DUF3451=PU(30.9=71.9)
A:
PF119333=DUF3451=FE(51.6=100)
C2:
PF119333=DUF3451=PD(16.1=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGATAGGTGTTTTCTCGG
R:
ACTGGCCATACTCATTGCCCT
Band lengths:
347-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]