GgaEX1051164 @ galGal3
Exon Skipping
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21327284-21329314:-
Coord C1 exon
chr7:21329182-21329314
Coord A exon
chr7:21328352-21328590
Coord C2 exon
chr7:21327284-21327457
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATTTACCTTTTTCTCTCTAGAAC
3' ss Score
10.74
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
Seq A exon
AACTTGAGGAATCAAGACAGAAATGCCCACCGTGCTGGTATAAATTTGCTAACACTTGCTTGATTTGGGACTGCTGCACTCCATGGCTGAAAGTCAAACATATTGTAAATTTGATTGTGATGGACCCATTTGTTGATCTGGCCATTACTATCTGCATTGTTCTAAACACTCTGTTCATGGCCATGGAGCACTATCCAATGACGGAACAGTTTAGTGGTGTCCTTTCAGTAGGAAACCTT
Seq C2 exon
GTGTTTACTGGAATTTTCACAGCAGAAATGTTTCTCAAGATAATTGCCATGGATCCTTACTATTATTTCCAAGAGGGCTGGAATATTTTTGATGGTTTTATTGTGAGTCTTAGTTTAATGGAGCTTGGTCTTGCAAATGTAGAAGGATTATCTGTCCTTCGATCATTCCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009-'21-18,'21-17,22-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.5=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTACTACAGAAACTGACT
R:
TCGGAATGATCGAAGGACAGA
Band lengths:
304-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]