RnoEX6017132 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51776208-51782842:+
Coord C1 exon
chr3:51776208-51776337
Coord A exon
chr3:51780703-51780941
Coord C2 exon
chr3:51782669-51782842
Length
239 bp
Sequences
Splice sites
3' ss Seq
CATTTTCTTTTCCTCCCCAGAAC
3' ss Score
11.04
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GGCACAACTACTGAGACAGAAATAAGGAAGAGGAGATCCAGTTCTTACCACGTCTCTATGGACTTGTTGGAAGACCCTTCAAGGCAAAGGGCAATGAGTATGGCCAGTATTTTGACGAACACTATGGAAG
Seq A exon
AACTTGAAGAATCCAGACAGAAATGCCCACCCTGCTGGTATAAATTTGCTAATATGTGCCTGATTTGGGACTGTTGTAAGCCATGGCTAAAGGTAAAACACGTTGTCAATCTGGTAGTGATGGATCCATTTGTTGACCTGGCCATCACCATCTGCATTGTGTTAAATACGCTCTTCATGGCCATGGAGCACTACCCCATGACTGAGCAGTTCAGCAGTGTGCTGTCTGTTGGGAATTTG
Seq C2 exon
GTCTTCACTGGGATCTTCACGGCAGAAATGTTTCTCAAGATAATAGCCATGGATCCATATTATTACTTCCAAGAAGGCTGGAATATCTTTGATGGCTTTATAGTGAGCCTTAGTTTAATGGAACTCGGCTTGGCGAATGTGGAAGGATTGTCAGTTCTCCGATCATTCCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018-'18-25,'18-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.1=81.8)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACAACTACTGAGACAGAA
R:
GCCGGAATGATCGGAGAACTG
Band lengths:
302-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]