GgaEX1051164 @ galGal4
Exon Skipping
Gene
ENSGALG00000011009 | SCN2A
Description
sodium channel, voltage gated, type II alpha subunit [Source:HGNC Symbol;Acc:HGNC:10588]
Coordinates
chr7:19349179-19351209:-
Coord C1 exon
chr7:19351077-19351209
Coord A exon
chr7:19350247-19350485
Coord C2 exon
chr7:19349179-19349352
Length
239 bp
Sequences
Splice sites
3' ss Seq
ATTTACCTTTTTCTCTCTAGAAC
3' ss Score
10.74
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGCACTACTACAGAAACTGACTTAAGAAAAAGAAGGTCTAGTTCTTACCAGGTTCCTATGGACTACCTAACAGATCCTAGTGCAAGGCAGCGAGCAATGAGTATAGCCAGCATGCTCACAAATACGATGGAAG
Seq A exon
AACTTGAGGAATCAAGACAGAAATGCCCACCGTGCTGGTATAAATTTGCTAACACTTGCTTGATTTGGGACTGCTGCACTCCATGGCTGAAAGTCAAACATATTGTAAATTTGATTGTGATGGACCCATTTGTTGATCTGGCCATTACTATCTGCATTGTTCTAAACACTCTGTTCATGGCCATGGAGCACTATCCAATGACGGAACAGTTTAGTGGTGTCCTTTCAGTAGGAAACCTT
Seq C2 exon
GTGTTTACTGGAATTTTCACAGCAGAAATGTTTCTCAAGATAATTGCCATGGATCCTTACTATTATTTCCAAGAGGGCTGGAATATTTTTGATGGTTTTATTGTGAGTCTTAGTTTAATGGAGCTTGGTCTTGCAAATGTAGAAGGATTATCTGTCCTTCGATCATTCCGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.5=82.2)
A:
PF0052026=Ion_trans=PU(1.6=3.8)
C2:
PF0052026=Ion_trans=FE(30.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTACTACAGAAACTGACT
R:
TCGGAATGATCGAAGGACAGA
Band lengths:
304-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]