GgaEX1051169 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19419809-19421987:+
Coord C1 exon
chr7:19419809-19419950
Coord A exon
chr7:19420108-19420314
Coord C2 exon
chr7:19421688-19421987
Length
207 bp
Sequences
Splice sites
3' ss Seq
ATATGCTTTCTACTTCCTAGACA
3' ss Score
7.02
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCAGTGTCCAGAGGGATATATATGTGTGAAAGCTGGTAGAAATCCCAACTATGGTTACACAAGTTTTGACACTTTCAGTTGGGCTTTTCTGTCACTCTTTCGGCTAATGACTCAGGACTTCTGGGAAAACCTGTATCAACTG
Seq A exon
ACACTACGTGCTGCTGGGAAAACATACATGATATTTTTTGTTCTGGTGATTTTTCTGGGCTCATTCTATCTGATCAACTTGATCCTGGCTGTGGTTGCCATGGCCTATGAGGAGCAGAACCAAGCAACTATGGAAGAAGCAGAGCAGAAAGAGGCAGAATTTCAACAGATGTTAGAACAGCTAAAGAAGCAGCAAGAAGAAGCACAG
Seq C2 exon
GCAACGGCAGCAGTGGCAGCAGCATCAGTTGCATCAAGGGATTTCAGTGGGGTAGGGGGATTAGGAGAACTCTTGGAAAGTTCTTCAGAAGCATCAAAGTTGAGCTCAAAGAGTGCTAAAGAAAGAAGAAACAGAAGGAAGAGAAGAAGACAGAAAGAAATGTCTGAAGCAGAAGACAAGGGAGATATTGACAAGTTCCCCAAGTCCGAGTCAGAAGATAGTATCAGAAGAAAAAGTTTCCGCTTCTCCACAGAAGGAAGTCAACTGACATATGAAAAAAGGTTCACATCTCCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.174 C2=0.520
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=PD(11.6=44.9)
C2:
PF119333=DUF3451=PU(31.4=71.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTTTCAGTTGGGCTTT
R:
CTTCTGACTCGGACTTGGGGA
Band lengths:
293-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]