RnoEX6017119 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51588880-51598142:-
Coord C1 exon
chr3:51598001-51598142
Coord A exon
chr3:51597080-51597286
Coord C2 exon
chr3:51588880-51589170
Length
207 bp
Sequences
Splice sites
3' ss Seq
TTATCCCTTTTCTACACTAGACA
3' ss Score
6.82
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
ACAATGTCCAGAAGGGTACATCTGTGTGAAGGCTGGACGAAACCCCAACTACGGCTACACAAGCTTTGACACCTTCAGCTGGGCCTTCTTGTCCCTGTTTCGACTCATGACTCAGGACTACTGGGAGAATCTTTACCAGTTG
Seq A exon
ACATTGCGTGCAGCTGGGAAAACCTACATGATATTTTTCGTCCTGGTAATTTTCTTGGGCTCGTTTTATTTGGTGAACTTGATCCTGGCTGTGGTGGCCATGGCCTATGAGGAGCAGAACCAGGCCACACTGGAGGAGGCTGAACAGAAGGAGGCAGAGTTTCAGCAGATGCTGGAGCAACTGAAGAAGCAGCAGGAGGAGGCTCAG
Seq C2 exon
GCAGTGGCTGCAGCCTCCGCGGCATCCAGAGACTTCAGTGGAATAGGAGGGTTAGGAGAACTTCTGGAGAGTTCTTCAGAAGCTTCCAAGTTGAGCTCCAAGAGTGCTAAGGAGTGGAGGAACCGGAGGAAGAAGAGGAGACAGAGGGAACACTTGGAGGGAAACCACAGAGCCGATGGAGACAGGTTTCCCAAGTCGGAATCGGAAGACAGTGTCAAACGAAGAAGCTTCCTGCTCTCCCTGGATGGCAACCCGCTGACTGGTGACAAGAAGCTGTGCTCTCCCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.116 C2=0.557
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
PF0052026=Ion_trans=PD(11.6=44.9)
C2:
PF119333=DUF3451=PU(50.4=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAAGGCTGGACGAAAC
R:
CTCCATCGGCTCTGTGGTTTC
Band lengths:
301-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]