GgaEX1054463 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4405584-4406625:+
Coord C1 exon
chr9:4405584-4405700
Coord A exon
chr9:4406025-4406112
Coord C2 exon
chr9:4406545-4406625
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTTCCCCAAGCAGCCT
3' ss Score
6.47
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GCATCAGGCAGAACTGCTCCACAAACCCCTGCAAGAATGGAGGCACCTGTGTAAGCGAGAGCGAATCCTACCATTGCGACTGCATCCCGGGCTTCAAGGGCAGGCACTGTGAGCTAG
Seq A exon
CCTGCAAGAAGGTGCCACACTCGTGCACGCGGCTGTACTCGGAAACCAAGTCATTCCCTGTGTGGGAAGGAGGCACCTGCCACTACCT
Seq C2 exon
GTACAGGAGAGTATACAAGGTACACCAGGATGTATGCTACAAGGAGAGCTGTGAGAGCACCGGTTCCAAGAAAACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5),PF055076=MAGP=PU(31.2=62.5)
A:
PF055076=MAGP=FE(36.2=100)
C2:
PF055076=MAGP=PD(31.2=89.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACAAACCCCTGCAAGAA
R:
GGTTTTCTTGGAACCGGTGCT
Band lengths:
177-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]