MmuEX6026466 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93289308-93295801:+
Coord C1 exon
chr1:93289308-93289424
Coord A exon
chr1:93289998-93290085
Coord C2 exon
chr1:93295720-93295801
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTTGCATCATAGCCT
3' ss Score
7.5
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTACCCCTGGCAGCTGTTCAGAAGATGCTTGTCAGAATGGAGGCACCTGTGTCCCAGGTGCCGATGCCCACAGCTGTGACTGCAGGCCTGGGTTCAAAGGCAGACACTGTGAGCTTG
Seq A exon
CCTGTGAAAAAGTGCCCCGCCCCTGCACACGGCTGTTCTCTGAGACCAAGTCATTTCCTGTCTGGGAAGGCGACATCTGCCACCATGT
Seq C2 exon
GTATAAGAAAGTCTACAAAGTTCACCAGGACGTGTGCTTTAAGGAGCGCTGCCAGAGCACAAGCCTCAGGAAACCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'54-63,'54-59,55-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGTCAGAATGGAGGCAC
R:
TTGGGTTTCCTGAGGCTTGTG
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types