DreEX6021980 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27512363-27518912:+
Coord C1 exon
chr6:27512363-27512479
Coord A exon
chr6:27518641-27518728
Coord C2 exon
chr6:27518833-27518912
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTTCTGGTCATAGATT
3' ss Score
9.05
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
AGTCATCTCAAGACTGCAGAACTCAGCCCTGTCAGAATGGTGGAACGTGTGCACAGATCAACGAGTCCTTCAGCTGCAACTGTCCAAGCGGTTTCAAGGGCAGACGGTGTGAGCTAT
Seq A exon
ATTGCCAGCGAGTGTCTCACCCATGCACTCGCCTTTACTCCGAAACAAAGAGTGTGCCTGTGTGGGAGGATGGTGTCTGCCATTATTT
Seq C2 exon
GTACAAAAGGACATATAAAGTTCAGCAGGATGTTTGTTTTAGAGAGATCTGTGAGCCTTTGCTGCCTAAGAAAACTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'31-38,'31-37,33-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF055076=MAGP=FE(40.2=100),PF0000822=EGF=WD(100=77.5)
A:
PF055076=MAGP=FE(29.9=100)
C2:
PF055076=MAGP=PD(20.6=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACTGCAGAACTCAGCCC
R:
GCAAAGGCTCACAGATCTCTCT
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]