GgaEX1054465 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5942959-5944350:+
Coord C1 exon
chr9:5942959-5943070
Coord A exon
chr9:5943197-5943310
Coord C2 exon
chr9:5944237-5944350
Length
114 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCAAACTCTTGCAGAGA
3' ss Score
7.84
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GTGGGCTCGCTGGCCAAATACCACTGTGAGCTGGGCTACGTCCTCAGCCAGCACAACAGCCCCCGCGTCTGCCGCTCGCAGGGTGTCTGGAGCGACCCCCCTGAATGTGACG
Seq A exon
AGATTGATGAGTGCCGGTCTCAGCCCTGCCTGAACGGTGGCCAATGCAAAGACCGCATCGCCGAGTTCCTGTGCGTGTGCGAGCCGGGATACACGGGCCTCCACTGTGAGTTGG
Seq C2 exon
AAGTTGATGAGTGCCAATCAGAGCCCTGTAAGAACGGTGGCACCTGCCGGGACCTCCTGGGCTCCTTTGCCTGCTCCTGTCCCGCGGGCTTCATGGGCACCCAGTGCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'22-20,'22-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=79.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCAAATACCACTGTGA
R:
CACTGGGTGCCCATGAAGC
Band lengths:
210-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]