GgaEX1065050 @ galGal3
Exon Skipping
Gene
ENSGALG00000004664 | ZDHHC12
Description
NA
Coordinates
chr17:5867555-5870163:-
Coord C1 exon
chr17:5870027-5870163
Coord A exon
chr17:5868988-5869074
Coord C2 exon
chr17:5867555-5867721
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCGTTTATTTATAGGCA
3' ss Score
6.47
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATCTGCAGAAGGAAGCGGAGCGCGGTGCCGCGCTGCAGCCAACGCTCTTCGTAGCGCTGCTCGGGTGCTCCGTCCTGCTGTACTTCAGGGTGTCCCTCATGGACCCGGGCTTCGTTAGGGCTGAAGAGGAAGCAGAG
Seq A exon
GCAGACAAAAGTGAAGAGCAATGCACGTTGGTACCCCAGGTTTCAAGCAGTGTGAAGATGCGGCGTTGCGGCTACTGCATGGTGAAG
Seq C2 exon
CAACCAATGCGAGCCAAGCACTGCCAGCTGTGCCAGCACTGTGTTCGGCGCTATGACCATCACTGCCCTTGGATTGAGAACTGTGTAGGAGAGAAGAATCACCCCCTCTTCATAGTCTACCTCAGCGTGCAGCTTGTAGTTCTGCTGTGGGGAGGACACATTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664-'2-2,'2-1,4-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(12.9=45.7)
A:
PF0152915=zf-DHHC=FE(17.2=100)
C2:
PF0152915=zf-DHHC=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTAGGGCTGAAGAGGAAGC
R:
TCCTCCCCACAGCAGAACTAC
Band lengths:
181-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]