DreEX6011629 @ danRer10
Exon Skipping
Gene
ENSDARG00000052787 | zdhhc12b
Description
zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]
Coordinates
chr5:31222921-31225464:+
Coord C1 exon
chr5:31222921-31223060
Coord A exon
chr5:31224716-31224808
Coord C2 exon
chr5:31225298-31225464
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTCACCTGACTGTTTTTCAGTTC
3' ss Score
7.25
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ACCTGCGCCGGCAGGAGGAGACTGGGGAGCTCACACTGCCGGTTCTCTTTGTGCTGCTGGTTCTGGTGTCTGTGTTGCTGTACTTTGCGGTCTCACTCATGGATCCTGGTTTTGTCCTGACTGATGACTGTGACTTGCAG
Seq A exon
TTCACACTTGGTATCGCAGAAGAAACACAGGATATGATTCCACAGACCACCAAATCCATACGACTGCGGCGCTGTGGACACTGTCTGGTGCAG
Seq C2 exon
CAACCGATGAGATCGAAACACTGCCAGACGTGTCAGCACTGTGTGCGTCGCTATGATCACCACTGCCCCTGGATCGAGAACTGCGTCGGGGAGAGGAACCATCGCTGGTTTGTGCTTTATCTGGCCGTCCAGTTTGTGGTCTTGCTGTGGGGACTGTACATGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052787-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(13.2=46.8)
A:
PF0152915=zf-DHHC=FE(18.0=100)
C2:
PF0152915=zf-DHHC=FE(34.8=100),PF096225=DUF2391=PU(36.8=50.0),PF041238=DUF373=PU(25.0=39.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTGCTGTACTTTGCGGT
R:
ACAAACCAGCGATGGTTCCTC
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]