MmuEX6100188 @ mm9
Exon Skipping
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:29947187-29948061:-
Coord C1 exon
chr2:29947925-29948061
Coord A exon
chr2:29947508-29947585
Coord C2 exon
chr2:29947187-29947353
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATCTTTGTTTCGTTTTCAGGGC
3' ss Score
11.18
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
AGCTACGCCAATGGGAAGAGCAAGGGGAGCTGCTCCTGCCCCTCACATTCCTGCTCCTGGTGCTAAGCTCCCTGCTGCTTTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTACTCAGCCCCAGCCTCAG
Seq A exon
GGCGAGCCCAAGGAGGAACAGGCAGCCATGGTTCCTCAGGCCGTCCCACTCCGGCGCTGCAGACACTGTCTGGTGCTG
Seq C2 exon
CAGCCCCTGCGTGCCCGGCACTGTCGTGATTGCCGCCGCTGTGTTCGGCGCTATGATCACCACTGTCCCTGGATGGAGAACTGTGTGGGTGAACGCAACCACCCGCTCTTTGTGGCCTACCTGGCACTGCAGCTGGTAGTTCTGCTGTGGGGCCTGTGCCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(13.0=45.7)
A:
PF0152915=zf-DHHC=FE(15.5=100)
C2:
PF0152915=zf-DHHC=FE(34.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTGCTCCTGGTGCTA
R:
ACCCACACAGTTCTCCATCCA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: