HsaEX6063329 @ hg19
Exon Skipping
Gene
ENSG00000160446 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:19159]
Coordinates
chr9:131483930-131484853:-
Coord C1 exon
chr9:131484717-131484853
Coord A exon
chr9:131484288-131484365
Coord C2 exon
chr9:131483930-131484096
Length
78 bp
Sequences
Splice sites
3' ss Seq
CACCCCACCCCTCATTCCAGGAG
3' ss Score
7.2
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGCTGCGGCAATGGGAGGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTCCTGGTGCTGGGCTCCCTGCTGCTCTACCTCGCTGTGTCACTCATGGACCCTGGCTACGTGAATGTGCAGCCCCAGCCTCAG
Seq A exon
GAGGAGCTCAAAGAGGAGCAGACAGCCATGGTTCCTCCAGCCATCCCTCTTCGGCGCTGCAGATACTGCCTGGTGCTG
Seq C2 exon
CAGCCCCTGAGGGCTCGGCACTGCCGTGAGTGCCGCCGTTGCGTCCGCCGCTACGACCACCACTGCCCCTGGATGGAGAACTGTGTGGGAGAGCGCAACCACCCACTCTTTGTGGTCTACCTGGCGCTGCAGCTGGTGGTGCTTCTGTGGGGCCTGTACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160446-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(15.1=45.7)
A:
PF0152915=zf-DHHC=FE(18.0=100)
C2:
PF0152915=zf-DHHC=FE(39.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTGTGTCACTCATGGAC
R:
CGCCAGGTAGACCACAAAGAG
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)