GgaEX1065050 @ galGal4
Exon Skipping
Gene
ENSGALG00000004664 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr17:5240024-5242997:-
Coord C1 exon
chr17:5242898-5242997
Coord A exon
chr17:5241457-5241543
Coord C2 exon
chr17:5240024-5240190
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCATTCGTTTATTTATAGGCA
3' ss Score
6.47
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CGGGCTCGCGGCGCCATGGGTGCCGGCGGGCTGTGGGTGAGGACCGCCCACACTGCCCTCAGCGGGGGCTTAACGCTGGGGCTCTTCCTGCACCGCACAG
Seq A exon
GCAGACAAAAGTGAAGAGCAATGCACGTTGGTACCCCAGGTTTCAAGCAGTGTGAAGATGCGGCGTTGCGGCTACTGCATGGTGAAG
Seq C2 exon
CAACCAATGCGAGCCAAGCACTGCCAGCTGTGCCAGCACTGTGTTCGGCGCTATGACCATCACTGCCCTTGGATTGAGAACTGTGTAGGAGAGAAGAATCACCCCCTCTTCATAGTCTACCTCAGCGTGCAGCTTGTAGTTCTGCTGTGGGGAGGACACATTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004664_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=FE(17.2=100)
C2:
PF0152915=zf-DHHC=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACGCTGGGGCTCTTCCT
R:
CCCCACAGCAGAACTACAAGC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]