DreEX6047942 @ danRer10
Exon Skipping
Gene
ENSDARG00000076632 | zdhhc12a
Description
zinc finger, DHHC-type containing 12a [Source:ZFIN;Acc:ZDB-GENE-081104-40]
Coordinates
chr8:2539428-2542092:-
Coord C1 exon
chr8:2541956-2542092
Coord A exon
chr8:2539883-2539978
Coord C2 exon
chr8:2539428-2539594
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTGGACTCTTTTAGACA
3' ss Score
4.41
5' ss Seq
CTGGTACTG
5' ss Score
4.41
Exon sequences
Seq C1 exon
ATCTGCGCAGGTGTCAGGAGAGAGGAGATCTGCTGCAGCCACTCGTCTTCAGCTCTGTGCTTCTGCTCTCGGTGCTGCTTTACTTCACCGTGTCTCTGATGGATCCTGGTTTTGTTCTGTCCGACAGTCAAACAGAG
Seq A exon
ACAGCATCAGGGGATGGTGATGAAGAACTGGAAGCGATGATTCCTCAAGAGCAGAACTCTATAAAGCAGAGACGCTGTGGATACTGCTTTTTACTG
Seq C2 exon
CAACCGATGCGCGCCAGACACTGTAAGTGGTGTAAACGGTGTGTGAGGAGATTTGATCATCACTGTCCCTGGATAGACAACTGTGTCGGAGAGCTAAATCACAGATGGTTCCTGCTGTATCTGTGTGTGCAGTTTACCGCGGTGTGCTGGGGTTTACAGAGCGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076632-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(12.6=45.7)
A:
PF0152915=zf-DHHC=FE(18.6=100)
C2:
PF0152915=zf-DHHC=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGAGGAGATCTGCTGCA
R:
CCTCACACACCGTTTACACCA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]