BtaEX6046511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000030540 | ZDHHC12
Description
zinc finger, DHHC-type containing 12 [Source:HGNC Symbol;Acc:HGNC:19159]
Coordinates
chr11:99246879-99247783:-
Coord C1 exon
chr11:99247647-99247783
Coord A exon
chr11:99247214-99247291
Coord C2 exon
chr11:99246879-99247045
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCCCCGTTTTTCAGGAG
3' ss Score
10.63
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
CACTTCGGCAGTGGGAAGAGCAGGGGGAGCTGCTCCTGCCCCTCACCTTCCTGCTGCTCGTGCTGGCCTCCCTGCTGCTTTACCTGACCGTGTCACTCATGGATCCGGGCTACGTGAATGTCCTGCCTCAGCCCCAG
Seq A exon
GAGGAGGCCAAGGAAGAGCAGACAGCCATGGTTCCTCAGGCCATCCCCCTTCGGCGCTGCAGATACTGCATGGTGCTG
Seq C2 exon
CAACCCCTGCGGGCTCGGCACTGCCGTGAGTGCCGCCGCTGTGTCCGCCGCTATGACCACCACTGCCCCTGGATGGAGAACTGTGTGGGCGAGCGCAACCACCCGCTCTTCGTGGCCTACCTGGCGCTGCAACTGGTGGTGCTTCTGTGGGCCCTGTACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030540-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(13.0=45.7)
A:
PF0152915=zf-DHHC=FE(15.5=100)
C2:
PF0152915=zf-DHHC=FE(34.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGTGAATGTCCTGCCTC
R:
CCACAGAAGCACCACCAGTTG
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]