RnoEX6016263 @ rn6
Exon Skipping
Gene
ENSRNOG00000015791 | Zdhhc12
Description
zinc finger, DHHC-type containing 12 [Source:RGD Symbol;Acc:1306593]
Coordinates
chr3:8657124-8658044:-
Coord C1 exon
chr3:8657908-8658044
Coord A exon
chr3:8657470-8657547
Coord C2 exon
chr3:8657124-8657290
Length
78 bp
Sequences
Splice sites
3' ss Seq
TACCCTTTTCTCATTTTCAGGAG
3' ss Score
11.75
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AGCTGCGTCAATGGGAAGAGCAAGGGGAACTGTTCCTGCCCCTCACTTTCCTGCTCCTGGTGCTGGGCTCGCTGCTGCTCTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTGCTCAGCCCCAGCCTCAG
Seq A exon
GAGGAGCCGAAGGAGGAACAGACAGCCATGGTTCCTCAGGCTATCCCACTTCGACGCTGCAGATACTGCCTGGTGCTG
Seq C2 exon
CAGCCCCTGCGTGCCCGACACTGTCGTGAGTGCCGCCGCTGTGTTCGTCGCTATGATCACCACTGTCCCTGGATGGAGAACTGTGTGGGTGAGCGCAACCACCCGCTCTTTGTGGCCTACCTGGCACTGCAGCTGGTGGTTCTTCTGTGGGGCCTGTACCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015791-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(13.0=45.7)
A:
PF0152915=zf-DHHC=FE(15.5=100)
C2:
PF0152915=zf-DHHC=FE(34.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTCCTGCCCCTCACTTTC
R:
TCCAGGGACAGTGGTGATCAT
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]