MmuEX6100188 @ mm10
Exon Skipping
Gene
ENSMUSG00000015335 | Zdhhc12
Description
zinc finger, DHHC domain containing 12 [Source:MGI Symbol;Acc:MGI:1913470]
Coordinates
chr2:30091667-30093019:-
Coord C1 exon
chr2:30092405-30093019
Coord A exon
chr2:30091988-30092065
Coord C2 exon
chr2:30091667-30091833
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATCTTTGTTTCGTTTTCAGGGC
3' ss Score
11.18
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CAGGCTTCCACACCAGGAGTCAGCCACCTTCAAAACCTCCTTGGCTCTCTTTCACCCAAGGGTACCAGAGTTGCCTACGCTCAGCTGTCTGGTGTCACCACGTCCATCACTTCTTAGCCCTCCCTCCTCTCCATAATCCTCCTTCACTGCCATGGGCTTAAACAGGCTGGCTGGCACCTTCCTAGCTGGAGCTCCTGGCTGGCTCCACCCTCTTCCAGGGCTGACTCTTCCCCTGGGGAGCCCCCTTCCTCCTGCCTCCCTCAGGTCTAGCCTCCATATCACCTCCAGCTACTTTCTTTCTACCCCCACCGCCTCCTGCCCTTCCCTTTTGCTATGGTTCTCACTGTCCTCTGGCCTCCCCAGAGCTACGCCAATGGGAAGAGCAAGGGGAGCTGCTCCTGCCCCTCACATTCCTGCTCCTGGTGCTAAGCTCCCTGCTGCTTTATCTGGCTGTGTCACTCATGGACCCCGGCTATGTGACTACTCAGCCCCAGCCTCAG
Seq A exon
GGCGAGCCCAAGGAGGAACAGGCAGCCATGGTTCCTCAGGCCGTCCCACTCCGGCGCTGCAGACACTGTCTGGTGCTG
Seq C2 exon
CAGCCCCTGCGTGCCCGGCACTGTCGTGATTGCCGCCGCTGTGTTCGGCGCTATGATCACCACTGTCCCTGGATGGAGAACTGTGTGGGTGAACGCAACCACCCGCTCTTTGTGGCCTACCTGGCACTGCAGCTGGTAGTTCTGCTGTGGGGCCTGTGCCTGGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015335-'7-6,'7-5,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.308 C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(13.0=45.7)
A:
PF0152915=zf-DHHC=FE(15.5=100)
C2:
PF0152915=zf-DHHC=FE(34.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCTGCTCCTGGTGCTA
R:
ACCCACACAGTTCTCCATCCA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types