GgaEX6002434 @ galGal3
Exon Skipping
Gene
ENSGALG00000012810 | ATP6V0A4
Description
NA
Coordinates
chr1:58388316-58390026:+
Coord C1 exon
chr1:58388316-58388413
Coord A exon
chr1:58388708-58388833
Coord C2 exon
chr1:58389932-58390026
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTGGCTCCTAAACAGACA
3' ss Score
5.72
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
GTTTTCTGGAAAATGAAATGGAAGATGCTGTGGAGATGATAGTCAAACTAGAGAAGTACCCAGAGACCCCCCTGCCTCGGGAAATGATTGATATGGAG
Seq A exon
ACAGTGCTGGAGAAACTTGAGGCTGAGCTGCTGGAAGCCAACCAGAACCAGCAAACACTGAAGCAGAACTTCCTTGAACTGATGGAACTCAAGCATCTGCTGAAGAAAACCCAGGACTTCTTTGAG
Seq C2 exon
GCAGAAACCAATCTGCCAGATGATTTCTTCAGTGAAGACACATCTGGCCTGCTGGAGCTGAGGACCACCCCTTCTGCTGCAGCTGCCAAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012810-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(19.6=83.3)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGGAAAATGAAATGGAAGATGC
R:
CTTGGCAGCTGCAGCAGAAG
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]