HsaEX6010767 @ hg19
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:866]
Coordinates
chr7:138447085-138453619:-
Coord C1 exon
chr7:138453525-138453619
Coord A exon
chr7:138447645-138447770
Coord C2 exon
chr7:138447085-138447179
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCTTCCTGCATAGACT
3' ss Score
9.43
5' ss Seq
GAGGTGGTC
5' ss Score
-0.57
Exon sequences
Seq C1 exon
GTTTTCTGGAAGACGAGATGCAAAATGAGATTGTAGTTCAGTTGCTCGAGAAAAGCCCACTGACCCCGCTCCCACGGGAAATGATTACCCTGGAG
Seq A exon
ACTGTTCTAGAAAAACTGGAAGGAGAGTTACAGGAAGCCAACCAGAACCAGCAGGCCTTGAAACAAAGCTTCCTAGAACTGACAGAACTGAAATACCTCCTGAAGAAAACCCAAGACTTCTTTGAG
Seq C2 exon
ACGGAAACCAATTTAGCTGATGATTTCTTTACTGAGGACACTTCTGGCCTCCTGGAGTTGAAAGCAGTGCCTGCATATATGACCGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTGGAAGACGAGATGCA
R:
ACTTTCCGGTCATATATGCAGGC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)