GgaEX7011142 @ galGal4
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4930657-4936184:+
Coord C1 exon
chr27:4930657-4930754
Coord A exon
chr27:4931298-4931426
Coord C2 exon
chr27:4936102-4936184
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTCCATCTTGCAGGCC
3' ss Score
11.81
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GATTTGTTGAAAAGGAGATCAAAAAAGCAAATATTCCTATCATGGACACGGGTGAAAACCCAGAGGTGCCATTTCCACGTGACATGATTGATTTGGAG
Seq A exon
GCCAACTTTGAGAAAATTGAAAATGAGCTTAAAGAAATCAACACAAATCAAGAAGCTCTGAAAAGAAACTTCTTGGAGCTGACAGAGTTAAAATTTATACTGCGTAAAACTCAGCAATTTTTTGACGAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAGGAATCCTCTTCGCTCCTGGAGCCAAGTGAGATGGGAAGAGGTGCCCCGCTACGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-'4-10,'4-3,5-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(25.0=100)
A:
PF0149614=V_ATPase_I=FE(32.8=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATATTCCTATCATGGACACGGGTG
R:
GGCACCTCTTCCCATCTCACT
Band lengths:
138-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]