RnoEX0013242 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88923954-88930924:+
Coord C1 exon
chr10:88923954-88924051
Coord A exon
chr10:88924739-88924867
Coord C2 exon
chr10:88930842-88930924
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTTAAAAAAAAACCCTAGGCC
3' ss Score
4.58
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GGTTTGTTGAGAAAGAGATAAGAAAAGCTAACATCCCAATTATGGACACTGGAGAGAACCCGGAGGTGCCCTTTCCCAGGGACATGATCGACTTGGAG
Seq A exon
GCCAATTTCGAGAAGATCGAAAACGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTAAAGCGAAACTTCCTGGAACTGACTGAATTAAAATTTATACTGCGCAAAACTCAGCAGTTTTTCGATGAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCACTCTTGGAGCCAAACGAGATGGGAAGAGGCGCGCCTTTACGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814-'13-16,'13-11,15-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.214
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(10.1=100)
A:
PF0149614=V_ATPase_I=FE(13.2=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
ENSRNOT00000087076fB1738
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGAGAAAGAGATAAGAAAAGCT
R:
CCAAGTCGTAAAGGCGCGC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]