MmuEX6089805 @ mm10
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101020473-101026763:+
Coord C1 exon
chr11:101020473-101020570
Coord A exon
chr11:101021054-101021182
Coord C2 exon
chr11:101026681-101026763
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTTAAACCCTAGGCC
3' ss Score
10
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GATTTGTTGAGAAAGAGATAAGGAAAGCTAACATCCCAATTATGGACACCGGTGAAAACCCAGAGGTGCCCTTCCCTCGGGACATGATCGACTTAGAG
Seq A exon
GCCAATTTCGAGAAGATTGAAAATGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTGAAGAGAAACTTCCTGGAACTGACTGAATTAAAATTTATCCTGCGAAAAACCCAGCAGTTTTTCGATGAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCACTCTTGGAGCCAAACGAGATGGGAAGAGGCGCACCCTTACGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'13-14,'13-8,14-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.000 C2=0.224
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(24.1=86.7)
A:
PF0149614=V_ATPase_I=FE(5.2=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGAGAAAGAGATAAGGAAAGCT
R:
CCAAGTCGTAAGGGTGCGC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types