DreEX6093996 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7598150-7599006:-
Coord C1 exon
chr24:7598909-7599006
Coord A exon
chr24:7598394-7598522
Coord C2 exon
chr24:7598150-7598232
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATCATGCCTTTGATCTCCAGGCA
3' ss Score
7.31
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
GGTTTGTAGAGAAGGAGATTAAGAAAGCCAACATTCCTACTATGGACACTGGCGAGAATCCTGAAGTCCCGTTCCCTCGAGACATGATTGACCTTGAG
Seq A exon
GCAACCTTTGAGAAGCTGGAGAATGAGCTGAAGGAGATCAACACTAATCAAGAGGCCCTGAAGAAGAACTTTCTAGAGCTGACAGAACTCAAGCATATCCTCAGACGTACTCAGCAGTTCTTTGATGAG
Seq C2 exon
ATGGAGGATCCTAACCTGTTGGAAGAATCATCATCTCTGCTGGACCCCAGTGAGGCCGGCCGGGGGGCTCCACTGAGGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(11.3=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAGAGAAGGAGATTAAGAAAGCC
R:
CCCAGCCTCAGTGGAGCC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]