BtaEX6088813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019218 | ATP6V0A1
Description
Bos taurus ATPase, H+ transporting, lysosomal V0 subunit a1 (ATP6V0A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174754]
Coordinates
chr19:43213007-43219944:+
Coord C1 exon
chr19:43213007-43213104
Coord A exon
chr19:43214086-43214214
Coord C2 exon
chr19:43219862-43219944
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTTCTATAGGCT
3' ss Score
10.88
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GATTTGTTGAGAAAGAGATAAGGAAAGCTAACATCCCAATTATGGACACTGGTGAAAACCCAGAGGTGCCCTTCCCCCGGGACATGATTGACTTAGAG
Seq A exon
GCTAATTTTGAGAAGATTGAAAATGAACTGAAGGAAATCAACACAAACCAGGAAGCTCTGAAGAGAAATTTCCTAGAACTAACTGAATTAAAATTTATACTTCGCAAAACTCAACAGTTTTTTGATGAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCGTCCCTCTTGGAGCCAAGCGAGATGGGAAGAGGCACGCCCTTGAGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019218-'10-9,'10-5,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(17.0=100)
A:
PF0149614=V_ATPase_I=FE(22.3=100)
C2:
PF0149614=V_ATPase_I=FE(14.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGAGAAAGAGATAAGGAAAGCT
R:
CCAAGTCTCAAGGGCGTGC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]