MmuEX6089805 @ mm9
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:100881787-100888077:+
Coord C1 exon
chr11:100881787-100881884
Coord A exon
chr11:100882368-100882496
Coord C2 exon
chr11:100887995-100888077
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTTAAACCCTAGGCC
3' ss Score
10
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
GATTTGTTGAGAAAGAGATAAGGAAAGCTAACATCCCAATTATGGACACCGGTGAAAACCCAGAGGTGCCCTTCCCTCGGGACATGATCGACTTAGAG
Seq A exon
GCCAATTTCGAGAAGATTGAAAATGAACTGAAGGAAATCAACACTAACCAGGAAGCTCTGAAGAGAAACTTCCTGGAACTGACTGAATTAAAATTTATCCTGCGAAAAACCCAGCAGTTTTTCGATGAG
Seq C2 exon
ATGGCGGATCCAGACCTGTTGGAAGAGTCCTCATCACTCTTGGAGCCAAACGAGATGGGAAGAGGCGCACCCTTACGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'5-10,'5-5,6-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.000 C2=0.225
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PD(24.1=86.7)
A:
PF0149614=V_ATPase_I=FE(5.2=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGAGAAAGAGATAAGGAAAGCT
R:
CCAAGTCGTAAGGGTGCGC
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: