BtaEX6028888 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004263 | ATP6V0A4
Description
ATPase, H+ transporting, lysosomal V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr4:103238693-103244366:-
Coord C1 exon
chr4:103244272-103244366
Coord A exon
chr4:103239684-103239809
Coord C2 exon
chr4:103238693-103238787
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCCTCCTGCAAAGACT
3' ss Score
5.58
5' ss Seq
GAGGTTGTA
5' ss Score
-3.07
Exon sequences
Seq C1 exon
GTTTTCTGGAAGATCAGATGCAAGATGAGATTGAGATTCAGGTGCCTGAGAAGTCCCCGCTGACCCCTCTCCCACGGGAAATGATCATCCTGGAG
Seq A exon
ACTGCTCTAGAAAAACTGGAAGGAGAGCTTCAGGAAGCCAATCAGAACTATCAGGCTTTGAAGAAAAACTTCCTAGAACTGACGGAATTCAAACATCTCCTGAAGAAAACCCAGGACTTCTTTGAG
Seq C2 exon
ACAGAAGCCAACTTAGCAGATGATTTCTTTGTAGAAGACACTTCCGGTCTCCTGGAGTTGAGACCTACGCCTGCGTACATCAGTGGAAAGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004263-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAGATCAGATGCAAGATGA
R:
CCCAGCTTTCCACTGATGTACG
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]