MmuEX6003771 @ mm10
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38087930-38092495:-
Coord C1 exon
chr6:38092401-38092495
Coord A exon
chr6:38088613-38088738
Coord C2 exon
chr6:38087930-38088024
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTCCTCCCTTGCAGACG
3' ss Score
12.52
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTTTTCTGGAAGATGAGATGCAAAACGAGATTTTAATCCAAGTGCCTGAGAAGGATGCTGAGACCCCTCTCCCTCGGGAAATGATCACCCTGGAG
Seq A exon
ACGACTCTAGAGAAGTTGGAAGGAGAGCTGCAGGAAGCCAACCAGAGCCACCAGGCTTTGAAGAAGAGCTTTCTGGAACTGACAGAGCTCAAATACCTCCTAAAGAAAACCCAGGACTTTTTTGAG
Seq C2 exon
ACAGAAACCAACTTAGGTGAAGATTTCTTTGTTGAAGACACTTCGGGTCTCTTGGAGCTAAGAACCATACCTGCCTTCATGACTGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600-'17-14,'17-13,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.9=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAGATGAGATGCAAAACGA
R:
CCCAACTTTCCAGTCATGAAGG
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types