HsaEX6010767 @ hg38
Exon Skipping
Gene
ENSG00000105929 | ATP6V0A4
Description
ATPase H+ transporting V0 subunit a4 [Source:HGNC Symbol;Acc:HGNC:866]
Coordinates
chr7:138762340-138768874:-
Coord C1 exon
chr7:138768780-138768874
Coord A exon
chr7:138762900-138763025
Coord C2 exon
chr7:138762340-138762434
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCCTTCCTGCATAGACT
3' ss Score
9.43
5' ss Seq
GAGGTGGTC
5' ss Score
-0.57
Exon sequences
Seq C1 exon
GTTTTCTGGAAGACGAGATGCAAAATGAGATTGTAGTTCAGTTGCTCGAGAAAAGCCCACTGACCCCGCTCCCACGGGAAATGATTACCCTGGAG
Seq A exon
ACTGTTCTAGAAAAACTGGAAGGAGAGTTACAGGAAGCCAACCAGAACCAGCAGGCCTTGAAACAAAGCTTCCTAGAACTGACAGAACTGAAATACCTCCTGAAGAAAACCCAAGACTTCTTTGAG
Seq C2 exon
ACGGAAACCAATTTAGCTGATGATTTCTTTACTGAGGACACTTCTGGCCTCCTGGAGTTGAAAGCAGTGCCTGCATATATGACCGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105929-'8-14,'8-13,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(3.8=100)
A:
PF0149614=V_ATPase_I=FE(5.1=100)
C2:
PF0149614=V_ATPase_I=FE(3.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTGGAAGACGAGATGCA
R:
ACTTTCCGGTCATATATGCAGGC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains