RnoEX6013201 @ rn6
Exon Skipping
Gene
ENSRNOG00000013428 | Atp6v0a4
Description
ATPase H+ transporting V0 subunit a4 [Source:RGD Symbol;Acc:1305055]
Coordinates
chr4:65775471-65779295:-
Coord C1 exon
chr4:65779201-65779295
Coord A exon
chr4:65776148-65776273
Coord C2 exon
chr4:65775471-65775565
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCCACCCTTGCAGACT
3' ss Score
10.73
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GTTTTCTGGAAGATGAGATGCAAAATGAGATTATAATCCAAGTGCCTGACAAGGATCCAGGGACCCCTCTGCCCCGGGAAATGATCACCCTGGAG
Seq A exon
ACTACTCTGGAGAAGTTGGAAGGAGAGCTACAGGAAGCCAACCAGAGCCATCAGGCTTTGAAGAAGAGCTTTTTGGAACTGACAGAGCTCAAATACCTCCTGAAGAAAACCCAGGACTTTTTTGAG
Seq C2 exon
ACAGAAACCAACTTAGGTGAAGATTTCTTTGTTGAAGACACTTCAGGTCTCTTGGAGCTAAGAGCCATGCCTGCATTCATGACTGGAAAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013428-'5-13,'5-12,6-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(5.2=100)
C2:
PF0149614=V_ATPase_I=FE(3.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAAGATGAGATGCAAAATGAGA
R:
CCCAACTTTCCAGTCATGAATGC
Band lengths:
186-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]