DreEX6015794 @ danRer10
Exon Skipping
Gene
ENSDARG00000020847 | atp6v0a1a
Description
ATPase, H+ transporting, lysosomal V0 subunit a1a [Source:ZFIN;Acc:ZDB-GENE-030131-3027]
Coordinates
chr3:16781687-16786021:+
Coord C1 exon
chr3:16781687-16781784
Coord A exon
chr3:16783993-16784121
Coord C2 exon
chr3:16785939-16786021
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTCTGATTGATCTTTTGTAGGCC
3' ss Score
7.77
5' ss Seq
GAGGTCTGC
5' ss Score
3.9
Exon sequences
Seq C1 exon
GATTTGTTGAGAAGGAAATCAAAAAGGCGAACATACCTATTGTAGATACAGGGGAGAATCCAGAGGTCCCCTTTCCACGAGACATGATTGACTTGGAG
Seq A exon
GCCACCTTTGAAAAACTGGAGAACGAGCTGAAGGAGATCAACACCAACCAGGAAGCCCTGAAGAAGAATTTTCTCGAGTTGACTGAGCTCAAGCACATCCTCCGACGAACGCAGCAGTTCTTTGATGAG
Seq C2 exon
ATGGAAGATCCTTCACTTTTGGAAGAGTCATCAACTCTACTGGACCCGAATGAAGTTGGACGGGCCGCTCCTCTCAGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020847-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.0=100)
A:
PF0149614=V_ATPase_I=FE(5.2=100)
C2:
PF0149614=V_ATPase_I=FE(3.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGAGAAGGAAATCAAAAAGGCG
R:
CCAAGCCTGAGAGGAGCGG
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]