GgaEX6003045 @ galGal4
Exon Skipping
Gene
ENSGALG00000014178 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr1:68715574-68718160:-
Coord C1 exon
chr1:68718008-68718160
Coord A exon
chr1:68716881-68716960
Coord C2 exon
chr1:68715574-68715726
Length
80 bp
Sequences
Splice sites
3' ss Seq
CACTGATCTTTATTTTTTAGAGG
3' ss Score
7.96
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
CTTCTCCTACTTCAATTACTACATATGAAACGTGTCAGACTTATGAGAGACCTATTGCATTTACTTCAAGATCAAGGAAGCTATGGATTCAGTTCAAGTCAAATGAAGGCAACAGTGGCAAAGGATTTCAAGTCCCTTATGTGACTTATGATG
Seq A exon
AGGATTACCAACAGCTAATAGAAGATATTGTTCGAGATGGACGATTATATGCATCAGAAAATCATCAAGAAATTCTAAAG
Seq C2 exon
GACAAGAAACTGATTAAAGCTCTTTTTGACGTACTGGCACATCCACAAAACTACTTCAAGTACACAGCACAAGAGTCAAAAGAGATGTTTCCAAGATCATTTATAAAGCTATTGCGATCAAAAGTTTCCAGATTTCTACGACCGTATAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014178-'27-35,'27-34,28-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCAGACTTATGAGAGACCT
R:
TGGATGTGCCAGTACGTCAAA
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]