DreEX6000992 @ danRer10
Exon Skipping
Gene
ENSDARG00000063097 | scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:ZFIN;Acc:ZDB-GENE-050302-78]
Coordinates
chr4:8905977-8907484:-
Coord C1 exon
chr4:8907332-8907484
Coord A exon
chr4:8907054-8907133
Coord C2 exon
chr4:8905977-8906965
Length
80 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTTGATATTACAGAAG
3' ss Score
5.57
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
CCCTGCCCACTTCCATTACAACTTATGAGACCTGCCAAACTTATGAGCGACCGATCGCCTTCACCTCCCGTTCACGCAAACTGTGGATCCAGTTTAAATCCAATGAGGGTAACAGTGGAAAGGGATTTCAGGTTCCATATGTCACTTATGATG
Seq A exon
AAGATTACCAGCAACTCATAGAAGACATTGTTCGAGACGGTCGACTATATGCCTCAGAAAACCATCAGGAGATATTAAAA
Seq C2 exon
GATAAGAAGCTGATTAAAGCTCTGTTTGACGTACTGGCTCACCCTCAAAATTACTTTAAATACACTGTGCAGGAATCAAAGGAAATGTTCCCACGTTCCTTCATCAAACTGCTACGTTCCAAAGTCTCAAGGTTTCTACGGCCGTATAAATAGAAACCCGAAACTCTGATCCACGACTTTCTTTCCTCATCTCTCTTCCACCTCTTTTTCTCCACTAGCTTTCAGAAGGCCTCACTACTGCAAGAAGATAAAGACATTTGGCCTTCTTTCTCTCTGAGATTTGTCCCCTTTTTTGTCTTTGTTTGCTATAATTTATGTGCTCGATTTTGCGAAAGCCCTTGTTGGATGTTTGATATCTACAGTATATATATATTTGTATATGTATGTATTTATATATGTGTGTGTGTTTGCGTGTACAAAATATGATGTGCAAGTTTATGGCATAGTAGTAGGACACAAACAGACACACACAGATATATATTCTTGTTTCAAAAACGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063097-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(42.7=90.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAACTTATGAGCGACCGA
R:
TTTGAGGGTGAGCCAGTACGT
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]