MmuEX0041326 @ mm9
Exon Skipping
Gene
ENSMUSG00000016763 | Scube1
Description
signal peptide, CUB domain, EGF-like 1 [Source:MGI Symbol;Acc:MGI:1890616]
Coordinates
chr15:83433013-83439306:-
Coord C1 exon
chr15:83439154-83439306
Coord A exon
chr15:83438648-83438727
Coord C2 exon
chr15:83433013-83437907
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTGGCCGGCTCCCAGAGG
3' ss Score
5
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTCGCCCACGTCAGTCACCACCTATGAGACGTGCCAGACCTATGAGCGGCCCATCGCCTTTACCTCCCGTTCCCGCAAACTCTGGATCCAGTTCAAATCCAACGAAGCCAACAGTGGCAAAGGGTTTCAAGTGCCCTATGTCACCTATGATG
Seq A exon
AGGACTACCAGCAGCTAATAGAAGACATCGTGCGTGATGGGCGCTTATATGCCTCGGAGAACCATCAGGAGATTTTGAAA
Seq C2 exon
GACAAGAAGCTGATCAAGGCCCTCTTTGACGTGCTGGCACACCCACAAAACTACTTCAAATACACAGCCCAGGAGTCCAAGGAGATGTTCCCCCGGTCCTTTATCAAACTTCTGCGTTCCAAAGTGTCTCGGTTCCTGCGGCCCTACAAATAACCAGCCAGCTGTCCTGTGTGGGGACAGTGGGAGCCAAGTGGGAGGGGAATGTGCCTTCCCTTCACAGCAGGAGCCAAAAGGAGGCTCCACGGGCCTCCAGGCTGCCGTGAGAAACCCATGACACATGCCTCTGGCAAAGCCATCCAGCCTGTACTGCCTCCGTGGAAGGCCTAGACCCAGCAGAGACCCCTTGGTGGGTCTGCCATGCCTGTGGGGAAACACTGCTTCAGAAAGCCTTCACCTACCCTCTGCCTCTATTTCCCAGGACACCTAGAGGATTCCCTTCTGAACCACCCCAGTGGGGTCTACCTGGGCCGGGACACACTGTACCCACCATGTGGGGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016763_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCCTTTACCTCCCGTTC
R:
TGGACTCCTGGGCTGTGTATT
Band lengths:
180-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types