HsaEX0056656 @ hg19
Exon Skipping
Gene
ENSG00000159307 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:13441]
Coordinates
chr22:43599229-43604230:-
Coord C1 exon
chr22:43604078-43604230
Coord A exon
chr22:43603540-43603619
Coord C2 exon
chr22:43599229-43600155
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCTGCTGACCCGCTGCCCAGAGG
3' ss Score
4.21
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTCTCCCACGTCCATCACCACCTATGAGACCTGCCAGACCTACGAGAGGCCCATCGCCTTCACCTCCCGCTCCCGCAAGCTCTGGATCCAGTTCAAATCCAATGAAGGCAACAGCGGCAAAGGCTTCCAAGTGCCCTATGTCACCTACGATG
Seq A exon
AGGACTACCAGCAACTCATAGAGGACATCGTGCGCGATGGGCGCCTGTACGCCTCGGAGAACCACCAGGAAATTTTGAAA
Seq C2 exon
GACAAGAAGCTGATCAAGGCCCTCTTCGACGTGCTGGCGCATCCCCAGAACTACTTCAAGTACACAGCCCAGGAATCCAAGGAGATGTTCCCACGGTCCTTCATCAAACTGCTGCGCTCCAAAGTGTCTCGGTTCCTGCGGCCCTACAAATAACCGGGGGGAGCGGCCCTGCCTGGGGGTGGCCTGGTCCGCGGAGGGTGCACCTGCCCTCCACAGTGGGAGCTGCATGGGCCTCCACACCACCTTGGGAACCCCATGGCACTGCCCTTCAGGGAAGCCGACCAGCCCATGGAGACCGAGCCCAGGCACCCTTCGGACCCGCTGCCCCTGTGGGAGCACCCTGCTTCAGGAAGCCTCCCTCCCTCCCTCTGCCTCCCTTCCCCAGGACACCAAGAGCGCCCTCTCCTGAGCCCTGGCAGACCGACTGCAGGTAGCAGGATTGCAGGACCCTCTGCCTGGCCTGGCGTTTCAGGAGAGAGGGGAAGTGGGGCCTGTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159307-'31-29,'31-28,32-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCAAGTGCCCTATGTC
R:
GGAACCGAGACACTTTGGAGC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)