GgaEX6026981 @ galGal4
Exon Skipping
Gene
ENSGALG00000002675 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr26:4079185-4079882:-
Coord C1 exon
chr26:4079730-4079882
Coord A exon
chr26:4079491-4079570
Coord C2 exon
chr26:4079185-4079334
Length
80 bp
Sequences
Splice sites
3' ss Seq
CTCTCACTTGGCTGTTGCAGAGG
3' ss Score
7.07
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTCCCCATCCTCCATCACCACCTATGAGACGTGCCAGACCTACGAGAGACCCATCGCCTTCACCGCCCGCTCTCGCAAACTCTGGATCAACTTCAAAACCAGCGAGGCCAACAGCGCCCGGGGCTTCCAGATCCCCTACGTCACCTATGATG
Seq A exon
AGGACTACGAGCAGCTGGTGGAGGACATCGTGCGGGACGGCAGGCTGTACGCCTCCGAAAACCACCAGGAGATCCTCAAG
Seq C2 exon
GACAAGAAGCTGATCAAAGCGTTCTTCGACGTGCTGGCACACCCCCAGAACTACTTCAAGTACACGGAGAAGCACAAGGAGATGCTGCCCCGCTCCTTCATCAAGCTGCTCCGCTCCAAAGTCTCCAGCTTCCTGCGGCCCTACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675-'23-34,'23-33,24-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCGCAAACTCTGGATC
R:
GCAGCATCTCCTTGTGCTTCT
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]