MmuEX6076345 @ mm10
Exon Skipping
Gene
ENSMUSG00000038677 | Scube3
Description
signal peptide, CUB domain, EGF-like 3 [Source:MGI Symbol;Acc:MGI:3045253]
Coordinates
chr17:28168129-28174852:+
Coord C1 exon
chr17:28168129-28168281
Coord A exon
chr17:28168382-28168461
Coord C2 exon
chr17:28171196-28174852
Length
80 bp
Sequences
Splice sites
3' ss Seq
CAACCCTGTTGACTTTACAGAGG
3' ss Score
6.4
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
CCTCCCCATCCTCTATCACCACTTACGAGACCTGCCAGACCTACGAGCGGCCCATTGCCTTCACCGCCCGGTCCAGGAAACTCTGGATCAACTTCAAGACCAGTGAGGCCAACAGCGCTCGAGGCTTCCAGATTCCCTATGTGACCTACGATG
Seq A exon
AGGACTATGAGCAGCTGGTGGAAGACATAGTGCGTGATGGCCGGCTGTATGCCTCAGAAAACCACCAGGAGATCCTAAAG
Seq C2 exon
GACAAGAAGCTTATCAAGGCCTTCTTTGAGGTCCTGGCCCACCCTCAAAACTACTTCAAGTACACAGAGAAACACAAGGAGATGCTGCCAAAATCCTTCATCAAGCTACTGCGCTCCAAAGTCTCCAGCTTCCTGAGGCCTTACAAATAGTGCCTGTGGGCCCGAGACCCAGTTCAGAGCTCCCACCTCCCTGGCCCTCAGAGTTGGCACCCCAACCTCAGACAAGAAACTGTCTCTCTTGAAGGAGAGATATCACCACACCAGGCGCTCTCCCTTTCGGCCTTTCTAGTTACCTTGTCTTCGTTCTGTCTCTCTCCTGGAAGTCATTCAGTGCGTCTCTGTTCCCCCCAGAGGTGAAGGAATAGACACCCTCTATTCCTCTGCCGTTATAGCATGGTGCCTTGCTAGCCAGGAGCCAAAACACCCCCTCCACAGCCCCCGTGCTCCCCAGAGTGGGTCTTCACAGCCCAGAGTCCTGCCAAAGAAGCCTTGGACATAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038677-'23-39,'23-37,33-39=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGCTTCCAGATTCCCT
R:
GGAAGCTGGAGACTTTGGAGC
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types