RnoEX0078750 @ rn6
Exon Skipping
Gene
ENSRNOG00000000500 | Scube3
Description
signal peptide, CUB domain and EGF like domain containing 3 [Source:RGD Symbol;Acc:1304880]
Coordinates
chr20:7742858-7746331:+
Coord C1 exon
chr20:7742858-7743010
Coord A exon
chr20:7743110-7743189
Coord C2 exon
chr20:7746182-7746331
Length
80 bp
Sequences
Splice sites
3' ss Seq
CAACCTTGTTGGCTTCACAGAGG
3' ss Score
6.24
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
CCTCCCCATCCTCCATCACCACGTATGAGACCTGCCAGACATACGAGCGGCCCATCGCCTTCACCGCCCGGTCCAGGAAACTCTGGATCAACTTCAAGACCAGCGAGGCCAACAGCGCGCGTGGTTTTCAGATTCCCTATGTAACCTACGATG
Seq A exon
AGGACTATGAGCAGCTGGTGGAAGATATAGTGCGGGATGGCCGGCTGTACGCCTCTGAGAACCACCAGGAGATCCTAAAG
Seq C2 exon
GATAAGAAGCTTATCAAGGCCTTCTTTGAGGTCCTGGCCCACCCCCAAAACTACTTCAAGTACACAGAGAAACACAAGGAGATGCTGCCAAAGTCCTTCATCAAGTTACTGCGCTCCAAGGTCTCCAGCTTCCTGAGGCCTTACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000500-'24-31,'24-30,25-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTGGTTTTCAGATTCCCT
R:
AGGAAGCTGGAGACCTTGGAG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]