BtaEX6097101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009226 | SCUBE3
Description
signal peptide, CUB domain, EGF-like 3 [Source:HGNC Symbol;Acc:HGNC:13655]
Coordinates
chr23:9164049-9166228:+
Coord C1 exon
chr23:9164049-9164201
Coord A exon
chr23:9164317-9164396
Coord C2 exon
chr23:9166079-9166228
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCATGGACTTTGCAGAGG
3' ss Score
6.42
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
CCTCCCCATCCTCCATTACCACCTATGAGACCTGCCAGACCTACGAGCGCCCCATCGCCTTCACAGCCCGCTCCAGGAAGCTCTGGATCAACTTCAAGACAAGTGAAGCCAACAGTGCCCGTGGCTTCCAGATCCCCTATGTTACCTACGATG
Seq A exon
AGGACTACGAGCAGCTGGTAGAAGACATTGTTCGAGATGGCCGGCTCTATGCATCTGAAAACCACCAGGAAATTTTAAAG
Seq C2 exon
GACAAGAAGCTCATTAAGGCCTTCTTCGAGGTGTTGGCCCACCCCCAGAACTACTTCAAGTACACAGAAAAGCACAAGGAGATGCTGCCAAAATCCTTCATCAAGCTGCTCCGCTCCAAAGTTTCCAGCTTCCTAAGGCCCTACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009226-'28-35,'28-33,29-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGCTTCCAGATCCCCTAT
R:
GTAGGGCCTTAGGAAGCTGGA
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]