BtaEX6025489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011275 | SCUBE1
Description
signal peptide, CUB domain, EGF-like 1 [Source:HGNC Symbol;Acc:HGNC:13441]
Coordinates
chr5:114644629-114647952:-
Coord C1 exon
chr5:114647800-114647952
Coord A exon
chr5:114647372-114647451
Coord C2 exon
chr5:114644629-114645111
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCGGGTTCCCGTCCTGGCAGAGG
3' ss Score
6.44
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTCACCCACATCCATCACCACCTATGAGACCTGCCAGACCTACGAGAGGCCCATCGCCTTCACCTCCCGCTCCCGGAAGCTCTGGATCCAGTTCAAATCCAATGAAGGCAACAGCGGCAAAGGGTTCCAAGTGCCCTATGTCACCTACGACG
Seq A exon
AGGACTACCAGCAGCTGATCGAAGACATCGTCCGCGACGGACGGCTCTACGCCTCGGAGAATCACCAGGAAATTTTGAAA
Seq C2 exon
GACAAGAAGCTGATCAAGGCCCTCTTTGACGTGCTGGCGCACCCCCAGAACTACTTCAAGTACACGGCCCAGGAGTCCAAGGAGATGTTTCCTCGCTCCTTCATCAAACTGCTGCGCTCCAAGGTGTCCCGATTCCTGCGGCCCTACAAGTAACTTGGGGACGGCGGCCCTGCTTGGGTGCCGGCTGCCCGGGGACGAGAGAGCCCTTCCACAGTCGAAGCTGAAGGCGGATCTGCGGGCACCCCCACACTGGCTTGGGAACCGCCGTGGCGCCTGCCCTTTGGGAATTGCCGACCAGCCCGTGGATGGCGAGACCAAGTCCAGGCCGAGACCCCAGCCCAGCTGCCCTCCTCCGACCCCGCCCCGGTGGGAGAACATTGCTCAAGGCAGCCTTTCTGGCTCCCTCCCTTGCTCTGCCCGTTCCCTTCCAGAACACTGAGGGCGCCTGCTGCTCCCAGGCCGGCCCCAGCGGATGCCCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011275-'20-23,'20-21,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCCACATCCATCACCAC
R:
AGAGGGCCTTGATCAGCTTCT
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]