RnoEX0078725 @ rn6
Exon Skipping
Gene
ENSRNOG00000010617 | Scube1
Description
signal peptide, CUB domain and EGF like domain containing 1 [Source:RGD Symbol;Acc:1309015]
Coordinates
chr7:124501988-124504622:-
Coord C1 exon
chr7:124504470-124504622
Coord A exon
chr7:124503968-124504047
Coord C2 exon
chr7:124501988-124503237
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTGGCCGGCTCCCAGAGG
3' ss Score
5
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCTCGCCCACGTCAGTCACCACCTATGAGACGTGCCAGACCTACGAGCGGCCTATCGCCTTCACCTCCCGCTCCCGCAAACTCTGGATCCAGTTCAAATCCAACGAGGCCAACAGTGGCAAAGGGTTTCAAGTGCCCTACGTCACCTATGACG
Seq A exon
AGGACTACCAGCAGCTAATAGAAGACATCGTGCGCGATGGGCGCTTGTATGCCTCGGAGAACCATCAGGAGATTTTGAAA
Seq C2 exon
GACAAGAAGCTGATCAAGGCCCTCTTTGATGTGTTGGCACACCCACAAAACTACTTCAAATACACAGCCCAGGAGTCAAAGGAGATGTTCCCCCGGTCCTTTATCAAACTTCTGCGTTCCAAAGTGTCTCGGTTCCTGCGGCCCTACAAATAACCAGCCAGCTGTCCTGCGTGGGGACAGTGGGAACCAAGTGGGAGGGGAATGTGCCTTCCCTCCACAGCACGAGATGAAAGGAGGCTCCATGGGCCTTCAGGCTGCCTTGAGAAACCCATGATACCTGCCTCTGGCAAAGCCGTCCAGCCTGGACCACCCCCATGGAAGGCCTAGACCCAGCACAGACCCCTTGGTGGGGCTGCCACTCCTGGGTGGAAGCAGTGCTTCAGAAAGCCTTCACCTACCCTCTGCCTCCCAGGACACCTAGAGTACTCCCTCCTGAACCACCGCAGTGGGATCTGCCTGGGCCAGGACATACTGTCCCCACCATGTGGGGAGCAGGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010617_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(41.8=88.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAAAGGGTTTCAAGTGC
R:
CGAGACACTTTGGAACGCAGA
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]