GgaEX6015039 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF84]
Coordinates
chr17:5012413-5013037:+
Coord C1 exon
chr17:5012413-5012519
Coord A exon
chr17:5012731-5012899
Coord C2 exon
chr17:5013004-5013037
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTTGCTTTGATGCAGATA
3' ss Score
9.05
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GGGAATATATAGCATTATACCAGAGTCAAAGGGCTATCCTCAAACAGCGGCACCAGGAGAAAGAAGAGTACATCAGCAGGCTGGCTCAGGATAAGGAAGAGATGAAG
Seq A exon
ATAAAATTACTGGAACTGCAGGATTTAGTGATGCGTCTGGTCAAGGAAAGAAATGAATGGTACAGCAAGTACGTAGCAGCTGCTCAAAGCCCAGAGCTGTTAGCAAGCCAGAATGAAAAGGCACTTCCAGTGGAGAGGCGCATCGAACTGAACGCTACTGATGGAGAAG
Seq C2 exon
GGTTACGAGAAGTGAATTTAGCAGATGAAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881-'34-46,'34-44,35-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.088 C2=0.250
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.6=100)
A:
PF150701=GOLGA2L5=FE(9.0=100)
C2:
PF150701=GOLGA2L5=FE(1.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTATACCAGAGTCAAAGGGCT
R:
TCTGCTTCATCTGCTAAATTCACT
Band lengths:
130-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]