HsaEX6063211 @ hg19
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:4425]
Coordinates
chr9:131018108-131019986:-
Coord C1 exon
chr9:131019880-131019986
Coord A exon
chr9:131019648-131019804
Coord C2 exon
chr9:131018108-131019560
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTTAGCACCCCTCCCTCCAGGTG
3' ss Score
9.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGAGTACATTGCACTGTACCAGAGCCAGAGGGCAGTGCTGAAGGAGCGGCACCGGGAGAAGGAGGAGTACATCAGCAGGCTGGCCCAAGACAAGGAGGAGATGAAG
Seq A exon
GTGAAGCTGCTGGAGCTGCAGGAGCTGGTCTTACGGCTTGTGGGCGACCGCAACGAGTGGCATGGCAGATTCCTGGCAGCTGCCCAGAACCCTGCTGATGAGCCCACTTCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCAACCAGCAGGGTG
Seq C2 exon
ATCTTTGCGAGGTGAGCCTCGCCGGCAGTGTGGAGCCTGCCCAAGGAGAGGCCAGGGAGGGTTCTCCCCGTGACAACCCCACTGCACAGCAGATCATGCAGCTGCTTCGTGAGATGCAGAACCCCCGGGAGCGCCCAGGCTTGGGCAGCAACCCCTGCATTCCTTTTTTTTACCGGGCTGACGAGAATGATGAGGTGAAGATCACTGTCATCTAAAAGCCGGCTACTGTCAGCAAAGCCTGAAGAAGTGGGGCTGGATACCCTGCCCCCACCATATCCCTACCATCCCTTCTCAGTCAACCCTTTACCCTTACAGTAGCAAGCATAGACCCCTGTCTAACGGGGGTAGACAGGTGCAGATGAGGTGAAGATCACTGTCATCTAAAAGCTGGCCACTAAATTAAAAAAAAATTAAAAGTTATGGGATTAAAAAAAGTTATGGGATAAAAAAGGTTATGGGTAACTTATGGTATAAAAGTTATGAAAAAAGGCCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.547 C2=0.775
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.6=100)
A:
PF150701=GOLGA2L5=FE(8.4=100)
C2:
PF150701=GOLGA2L5=PD(11.3=97.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGGAGAAGGAGGAGTAC
R:
ATCATTCTCGTCAGCCCGGTA
Band lengths:
248-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)